Organism Overview: secondary endosymbiont of Trabutina


 
tusC protein networkhttps://string-db.org/network/1835721.TRABTM_A_00010Protein TusC; Product derived from UniProtKB/Swiss-Prot:Q2NQL2;Gene name derived from UniProtKB/Swiss-Prot:Q2NQL2; Belongs to the DsrF/TusC family.
tusD protein networkhttps://string-db.org/network/1835721.TRABTM_A_00020Sulfurtransferase TusD; Product derived from UniProtKB/Swiss-Prot:Q2NQL1;Gene name derived from UniProtKB/Swiss-Prot:Q2NQL1;EC number derived from UniProtKB/Swiss-Prot:Q2NQL1.
tusA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00030Sulfurtransferase TusA; Sulfur carrier protein involved in sulfur trafficking in the cell. Part of a sulfur-relay system required for 2-thiolation during synthesis of 2-thiouridine of the modifie [...]
rplU protein networkhttps://string-db.org/network/1835721.TRABTM_A_0004050S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
rpmA protein networkhttps://string-db.org/network/1835721.TRABTM_A_0005050S ribosomal protein L27; Product derived from UniProtKB/Swiss-Prot:Q2NW36;Gene name derived from UniProtKB/Swiss-Prot:Q2NW36; Belongs to the bacterial ribosomal protein bL27 family.
obg protein networkhttps://string-db.org/network/1835721.TRABTM_A_00060GTPase Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in contro [...]
cspC protein networkhttps://string-db.org/network/1835721.TRABTM_A_00070Cold shock-like protein CspC; Product derived from UniProtKB/Swiss-Prot:P0A9Y9;Gene name derived from UniProtKB/Swiss-Prot:P0A9Y9.
SBT81895.1 protein networkhttps://string-db.org/network/1835721.TRABTM_A_00110Hypothetical protein.
trpE protein networkhttps://string-db.org/network/1835721.TRABTM_A_00120Anthranilate synthase component 1; Product derived from UniProtKB/Swiss-Prot:P00898;Gene name derived from UniProtKB/Swiss-Prot:P00898;EC number derived from UniProtKB/Swiss-Prot:P00898.
trpG protein networkhttps://string-db.org/network/1835721.TRABTM_A_00130Anthranilate synthase component 2; Product derived from UniProtKB/Swiss-Prot:Q8ZEG6;Gene name derived from UniProtKB/Swiss-Prot:Q8ZEG6;EC number derived from UniProtKB/Swiss-Prot:Q8ZEG6.
trpC protein networkhttps://string-db.org/network/1835721.TRABTM_A_00140Tryptophan biosynthesis protein TrpCF; Product derived from UniProtKB/Swiss-Prot:P00910;Gene name derived from UniProtKB/Swiss-Prot:P00910;EC number derived from UniProtKB/Swiss-Prot:P00910; Belo [...]
trpB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00150Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
trpA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00160Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
clsA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00170Cardiolipin synthase A; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
xthA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00180Exodeoxyribonuclease III; Product derived from UniProtKB/Swiss-Prot:P0A1A9;Gene name derived from UniProtKB/Swiss-Prot:P0A1A9;EC number derived from UniProtKB/Swiss-Prot:P0A1A9.
dsbB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00190Disulfide bond formation protein B; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
tsaB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00200tRNA threonylcarbamoyladenosine biosynthesis protein TsaB; Product derived from UniProtKB/Swiss-Prot:Q7CQE0;Gene name derived from UniProtKB/Swiss-Prot:Q7CQE0.
pcnB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00210Poly(A) polymerase I; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influenc [...]
dksA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00220RNA polymerase-binding transcription factor DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive [...]
SBT81907.1 protein networkhttps://string-db.org/network/1835721.TRABTM_A_00230Hypothetical protein.
cca protein networkhttps://string-db.org/network/1835721.TRABTM_A_00240Multifunctional CCA protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order [...]
tsaD protein networkhttps://string-db.org/network/1835721.TRABTM_A_00250tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is [...]
rpsU protein networkhttps://string-db.org/network/1835721.TRABTM_A_0026030S ribosomal protein S21; Product derived from UniProtKB/Swiss-Prot:C5BHG0;Gene name derived from UniProtKB/Swiss-Prot:C5BHG0; Belongs to the bacterial ribosomal protein bS21 family.
dnaG protein networkhttps://string-db.org/network/1835721.TRABTM_A_00270DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
rpoD protein networkhttps://string-db.org/network/1835721.TRABTM_A_00280RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the p [...]
grpE protein networkhttps://string-db.org/network/1835721.TRABTM_A_00300Protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleot [...]
smpB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00310SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tm [...]
tadA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00320tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
SBT81916.1 protein networkhttps://string-db.org/network/1835721.TRABTM_A_00330Putative mechanosensitive (Mcs) ion channel protein; Product derived from UniProtKB/Trembl:W0HU01.
trpS protein networkhttps://string-db.org/network/1835721.TRABTM_A_00340Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
aroK protein networkhttps://string-db.org/network/1835721.TRABTM_A_00350Shikimate kinase 1; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
sucC protein networkhttps://string-db.org/network/1835721.TRABTM_A_00360Succinyl-CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and [...]
sucD protein networkhttps://string-db.org/network/1835721.TRABTM_A_00370Succinyl-CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP an [...]
cydB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00400Cytochrome bd-I ubiquinol oxidase subunit 2; Product derived from UniProtKB/Swiss-Prot:P0ABK2;Gene name derived from UniProtKB/Swiss-Prot:P0ABK2;EC number derived from UniProtKB/Swiss-Prot:P0ABK2 [...]
dnaQ protein networkhttps://string-db.org/network/1835721.TRABTM_A_00410DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing funct [...]
rnhA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00420Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
gltX protein networkhttps://string-db.org/network/1835721.TRABTM_A_00430Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of [...]
bamD protein networkhttps://string-db.org/network/1835721.TRABTM_A_00440Outer membrane protein assembly factor BamD; Product derived from UniProtKB/Swiss-Prot:P0AC02;Gene name derived from UniProtKB/Swiss-Prot:P0AC02.
rluD protein networkhttps://string-db.org/network/1835721.TRABTM_A_00450Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
clpB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00460Chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to t [...]
asnS protein networkhttps://string-db.org/network/1835721.TRABTM_A_00630Asparagine--tRNA ligase; Product derived from UniProtKB/Swiss-Prot:Q2NU85;Gene name derived from UniProtKB/Swiss-Prot:Q2NU85;EC number derived from UniProtKB/Swiss-Prot:Q2NU85.
secA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00640Protein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the [...]
SBT81930.1 protein networkhttps://string-db.org/network/1835721.TRABTM_A_00650Uncharacterized protein; Product derived from UniProtKB/Trembl:Q2NVU5.
rsmH protein networkhttps://string-db.org/network/1835721.TRABTM_A_00660Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
leuB protein networkhttps://string-db.org/network/1835721.TRABTM_A_006703-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-met [...]
leuC protein networkhttps://string-db.org/network/1835721.TRABTM_A_006803-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
leuD protein networkhttps://string-db.org/network/1835721.TRABTM_A_006903-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. Leu [...]
surA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00700Chaperone SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, whic [...]
rsmA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00710Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S part [...]
carB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00720Carbamoyl-phosphate synthase large chain; Product derived from UniProtKB/Swiss-Prot:Q8Z9L7;Gene name derived from UniProtKB/Swiss-Prot:Q8Z9L7;EC number derived from UniProtKB/Swiss-Prot:Q8Z9L7; B [...]
carA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00730Carbamoyl-phosphate synthase small chain; Product derived from UniProtKB/Swiss-Prot:Q8FLB1;Gene name derived from UniProtKB/Swiss-Prot:Q8FLB1;EC number derived from UniProtKB/Swiss-Prot:Q8FLB1; B [...]
dapB protein networkhttps://string-db.org/network/1835721.TRABTM_A_007404-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
prmC protein networkhttps://string-db.org/network/1835721.TRABTM_A_00750Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; B [...]
prfA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00760Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
prs protein networkhttps://string-db.org/network/1835721.TRABTM_A_00770Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hy [...]
pth protein networkhttps://string-db.org/network/1835721.TRABTM_A_00780Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
ychF protein networkhttps://string-db.org/network/1835721.TRABTM_A_00790Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
argS protein networkhttps://string-db.org/network/1835721.TRABTM_A_00800Arginine--tRNA ligase; Product derived from UniProtKB/Swiss-Prot:Q2NTK2;Gene name derived from UniProtKB/Swiss-Prot:Q2NTK2;EC number derived from UniProtKB/Swiss-Prot:Q2NTK2.
aspS protein networkhttps://string-db.org/network/1835721.TRABTM_A_00810Aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor en [...]
ruvC protein networkhttps://string-db.org/network/1835721.TRABTM_A_00820Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to st [...]
ruvA protein networkhttps://string-db.org/network/1835721.TRABTM_A_00830Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may [...]
ruvB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00840Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may [...]
rpmB protein networkhttps://string-db.org/network/1835721.TRABTM_A_0085050S ribosomal protein L28; Product derived from UniProtKB/Swiss-Prot:B1JQX2;Gene name derived from UniProtKB/Swiss-Prot:B1JQX2; Belongs to the bacterial ribosomal protein bL28 family.
rpmG protein networkhttps://string-db.org/network/1835721.TRABTM_A_0086050S ribosomal protein L33; Product derived from UniProtKB/Swiss-Prot:B1JQX1;Gene name derived from UniProtKB/Swiss-Prot:B1JQX1; Belongs to the bacterial ribosomal protein bL33 family.
mutM protein networkhttps://string-db.org/network/1835721.TRABTM_A_00870Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a [...]
SBT81953.1 protein networkhttps://string-db.org/network/1835721.TRABTM_A_00900Probable peroxiredoxin; Product derived from UniProtKB/Swiss-Prot:Q8K9W0;EC number derived from UniProtKB/Swiss-Prot:Q8K9W0.
ribH protein networkhttps://string-db.org/network/1835721.TRABTM_A_009106,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. [...]
nusB protein networkhttps://string-db.org/network/1835721.TRABTM_A_00920N utilization substance protein B homolog; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator seque [...]
thiI protein networkhttps://string-db.org/network/1835721.TRABTM_A_00930tRNA sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the tran [...]
aroQ protein networkhttps://string-db.org/network/1835721.TRABTM_A_009403-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
rpsF protein networkhttps://string-db.org/network/1835721.TRABTM_A_0095030S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
rpsR protein networkhttps://string-db.org/network/1835721.TRABTM_A_0096030S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosom [...]
rplI protein networkhttps://string-db.org/network/1835721.TRABTM_A_0097050S ribosomal protein L9; Binds to the 23S rRNA.
rho protein networkhttps://string-db.org/network/1835721.TRABTM_A_00980Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and re [...]
SBT81962.1 protein networkhttps://string-db.org/network/1835721.TRABTM_A_00990Hypothetical protein.
yggE1 protein networkhttps://string-db.org/network/1835721.TRABTM_A_01000UPF0301 protein SG2023; Product derived from UniProtKB/Swiss-Prot:Q2NRC7;Gene name derived from UniProtKB/Trembl:W0HUF7; Belongs to the UPF0301 (AlgH) family.
yqgF protein networkhttps://string-db.org/network/1835721.TRABTM_A_01010Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
yggT protein networkhttps://string-db.org/network/1835721.TRABTM_A_01020Uncharacterized protein YggT; Product derived from UniProtKB/Swiss-Prot:P64564;Gene name derived from UniProtKB/Swiss-Prot:P64564.
suhB protein networkhttps://string-db.org/network/1835721.TRABTM_A_01030Inositol-1-monophosphatase; Product derived from UniProtKB/Swiss-Prot:P0ADG4;Gene name derived from UniProtKB/Swiss-Prot:P0ADG4;EC number derived from UniProtKB/Swiss-Prot:P0ADG4; Belongs to the [...]
iscS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01040Cysteine desulfurase IscS; Product derived from UniProtKB/Swiss-Prot:B5XNJ7;Gene name derived from UniProtKB/Swiss-Prot:B5XNJ7;EC number derived from UniProtKB/Swiss-Prot:B5XNJ7.
hisS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01050Histidine--tRNA ligase; Product derived from UniProtKB/Swiss-Prot:Q2NS41;Gene name derived from UniProtKB/Swiss-Prot:Q2NS41;EC number derived from UniProtKB/Swiss-Prot:Q2NS41.
der protein networkhttps://string-db.org/network/1835721.TRABTM_A_01060GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
dnaB protein networkhttps://string-db.org/network/1835721.TRABTM_A_01070Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DN [...]
ssb protein networkhttps://string-db.org/network/1835721.TRABTM_A_01080Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of act [...]
proS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01090Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA( [...]
tilS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01110tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is c [...]
dnaE protein networkhttps://string-db.org/network/1835721.TRABTM_A_01120DNA polymerase III subunit alpha; Product derived from UniProtKB/Swiss-Prot:Q8X8X5;Gene name derived from UniProtKB/Swiss-Prot:Q8X8X5;EC number derived from UniProtKB/Swiss-Prot:Q8X8X5.
skp protein networkhttps://string-db.org/network/1835721.TRABTM_A_01140Chaperone protein Skp; Product derived from UniProtKB/Swiss-Prot:Q6D8D4;Gene name derived from UniProtKB/Swiss-Prot:Q6D8D4; Belongs to the skp family.
bamA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01150Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Cons [...]
frr protein networkhttps://string-db.org/network/1835721.TRABTM_A_01160Ribosome-recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosome [...]
tsf protein networkhttps://string-db.org/network/1835721.TRABTM_A_01170Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the [...]
rpsB protein networkhttps://string-db.org/network/1835721.TRABTM_A_0118030S ribosomal protein S2; Product derived from UniProtKB/Swiss-Prot:B1JQG0;Gene name derived from UniProtKB/Swiss-Prot:B1JQG0; Belongs to the universal ribosomal protein uS2 family.
map protein networkhttps://string-db.org/network/1835721.TRABTM_A_01190Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharg [...]
uvrD protein networkhttps://string-db.org/network/1835721.TRABTM_A_01200DNA helicase II; Product derived from UniProtKB/Swiss-Prot:P03018;Gene name derived from UniProtKB/Swiss-Prot:P03018;EC number derived from UniProtKB/Swiss-Prot:P03018.
ppa protein networkhttps://string-db.org/network/1835721.TRABTM_A_01210Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
rsmD protein networkhttps://string-db.org/network/1835721.TRABTM_A_01220Ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD [...]
rpoH protein networkhttps://string-db.org/network/1835721.TRABTM_A_01230RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is invol [...]
serS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01240Serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further co [...]
trxB protein networkhttps://string-db.org/network/1835721.TRABTM_A_01250Thioredoxin reductase; Product derived from UniProtKB/Swiss-Prot:P0A9P4;Gene name derived from UniProtKB/Swiss-Prot:P0A9P4;EC number derived from UniProtKB/Swiss-Prot:P0A9P4.
cydD protein networkhttps://string-db.org/network/1835721.TRABTM_A_01260ATP-binding/permease protein CydD; Product derived from UniProtKB/Swiss-Prot:P29018;Gene name derived from UniProtKB/Swiss-Prot:P29018.
cydC protein networkhttps://string-db.org/network/1835721.TRABTM_A_01270ATP-binding/permease protein CydC; Product derived from UniProtKB/Swiss-Prot:P23886;Gene name derived from UniProtKB/Swiss-Prot:P23886.
infA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01280Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl- [...]
rpsA protein networkhttps://string-db.org/network/1835721.TRABTM_A_0129030S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
metG protein networkhttps://string-db.org/network/1835721.TRABTM_A_01300Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
gyrB protein networkhttps://string-db.org/network/1835721.TRABTM_A_01310DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in a [...]
pykF protein networkhttps://string-db.org/network/1835721.TRABTM_A_01320Pyruvate kinase I; Product derived from UniProtKB/Swiss-Prot:P77983;Gene name derived from UniProtKB/Swiss-Prot:P77983;EC number derived from UniProtKB/Swiss-Prot:P77983; Belongs to the pyruvate [...]
sufA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01390Protein SufA; Product derived from UniProtKB/Swiss-Prot:P77667;Gene name derived from UniProtKB/Swiss-Prot:P77667; Belongs to the HesB/IscA family.
pheT protein networkhttps://string-db.org/network/1835721.TRABTM_A_01400Phenylalanine--tRNA ligase beta subunit; Product derived from UniProtKB/Swiss-Prot:Q2NT27;Gene name derived from UniProtKB/Swiss-Prot:Q2NT27;EC number derived from UniProtKB/Swiss-Prot:Q2NT27; Be [...]
pheS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01410Phenylalanine--tRNA ligase alpha subunit; Product derived from UniProtKB/Swiss-Prot:Q2NT28;Gene name derived from UniProtKB/Swiss-Prot:Q2NT28;EC number derived from UniProtKB/Swiss-Prot:Q2NT28; B [...]
rplT protein networkhttps://string-db.org/network/1835721.TRABTM_A_0142050S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing func [...]
rpmI protein networkhttps://string-db.org/network/1835721.TRABTM_A_0143050S ribosomal protein L35; Product derived from UniProtKB/Swiss-Prot:Q2NT30;Gene name derived from UniProtKB/Swiss-Prot:Q2NT30; Belongs to the bacterial ribosomal protein bL35 family.
infC protein networkhttps://string-db.org/network/1835721.TRABTM_A_01440Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enha [...]
thrS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01450Threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end [...]
lysS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01460Lysine--tRNA ligase; Product derived from UniProtKB/Swiss-Prot:Q2NRG1;Gene name derived from UniProtKB/Swiss-Prot:Q2NRG1;EC number derived from UniProtKB/Swiss-Prot:Q2NRG1; Belongs to the class-I [...]
prfB protein networkhttps://string-db.org/network/1835721.TRABTM_A_01470Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
degQ protein networkhttps://string-db.org/network/1835721.TRABTM_A_01490Periplasmic pH-dependent serine endoprotease DegQ; Product derived from UniProtKB/Swiss-Prot:P39099;Gene name derived from UniProtKB/Swiss-Prot:P39099;EC number derived from UniProtKB/Swiss-Prot: [...]
rplM protein networkhttps://string-db.org/network/1835721.TRABTM_A_0150050S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages [...]
rpsI protein networkhttps://string-db.org/network/1835721.TRABTM_A_0151030S ribosomal protein S9; Product derived from UniProtKB/Swiss-Prot:Q2NWI3;Gene name derived from UniProtKB/Swiss-Prot:Q2NWI3; Belongs to the universal ribosomal protein uS9 family.
rsmI protein networkhttps://string-db.org/network/1835721.TRABTM_A_01520Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
cysS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01540Cysteine--tRNA ligase; Product derived from UniProtKB/Swiss-Prot:Q2NV45;Gene name derived from UniProtKB/Swiss-Prot:Q2NV45;EC number derived from UniProtKB/Swiss-Prot:Q2NV45; Belongs to the class [...]
dnaX protein networkhttps://string-db.org/network/1835721.TRABTM_A_01550DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' [...]
rpsP protein networkhttps://string-db.org/network/1835721.TRABTM_A_0156030S ribosomal protein S16; Product derived from UniProtKB/Swiss-Prot:Q2NVK4;Gene name derived from UniProtKB/Swiss-Prot:Q2NVK4; Belongs to the bacterial ribosomal protein bS16 family.
rimM protein networkhttps://string-db.org/network/1835721.TRABTM_A_01570Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. [...]
trmD protein networkhttps://string-db.org/network/1835721.TRABTM_A_01580tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
rplS protein networkhttps://string-db.org/network/1835721.TRABTM_A_0159050S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
valS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01600Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, [...]
argI protein networkhttps://string-db.org/network/1835721.TRABTM_A_01610Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
asd protein networkhttps://string-db.org/network/1835721.TRABTM_A_01620Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the as [...]
rpmF protein networkhttps://string-db.org/network/1835721.TRABTM_A_0165050S ribosomal protein L32; Product derived from UniProtKB/Swiss-Prot:A0KKH0;Gene name derived from UniProtKB/Swiss-Prot:A0KKH0; Belongs to the bacterial ribosomal protein bL32 family.
acpP protein networkhttps://string-db.org/network/1835721.TRABTM_A_01660Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
ligA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01670DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy sourc [...]
mutH protein networkhttps://string-db.org/network/1835721.TRABTM_A_01680DNA mismatch repair protein MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family.
rppH protein networkhttps://string-db.org/network/1835721.TRABTM_A_01690RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can [...]
truA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01700tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
gyrA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01710DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in a [...]
ybeY protein networkhttps://string-db.org/network/1835721.TRABTM_A_01740Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
leuS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01750Leucine--tRNA ligase; Product derived from UniProtKB/Swiss-Prot:Q2NUU7;Gene name derived from UniProtKB/Swiss-Prot:Q2NUU7;EC number derived from UniProtKB/Swiss-Prot:Q2NUU7; Belongs to the class- [...]
holA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01760DNA polymerase III subunit delta; Product derived from UniProtKB/Swiss-Prot:P28630;Gene name derived from UniProtKB/Swiss-Prot:P28630;EC number derived from UniProtKB/Swiss-Prot:P28630.
ydiY protein networkhttps://string-db.org/network/1835721.TRABTM_A_01800Uncharacterized protein YdiY; Product derived from UniProtKB/Swiss-Prot:P76206;Gene name derived from UniProtKB/Swiss-Prot:P76206.
glnS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01820Glutamine--tRNA ligase; Product derived from UniProtKB/Swiss-Prot:Q2NUP0;Gene name derived from UniProtKB/Swiss-Prot:Q2NUP0;EC number derived from UniProtKB/Swiss-Prot:Q2NUP0.
eno protein networkhttps://string-db.org/network/1835721.TRABTM_A_01830Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
lepA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01840Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon bac [...]
lepB protein networkhttps://string-db.org/network/1835721.TRABTM_A_01850Signal peptidase I; Product derived from UniProtKB/Swiss-Prot:P00803;Gene name derived from UniProtKB/Swiss-Prot:P00803;EC number derived from UniProtKB/Swiss-Prot:P00803; Belongs to the peptidas [...]
rnc protein networkhttps://string-db.org/network/1835721.TRABTM_A_01860Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRN [...]
era protein networkhttps://string-db.org/network/1835721.TRABTM_A_01870GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cyc [...]
acpS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01880Holo-[acyl-carrier-protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
priA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01890Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its h [...]
rpmE protein networkhttps://string-db.org/network/1835721.TRABTM_A_0190050S ribosomal protein L31; Binds the 23S rRNA.
rplY protein networkhttps://string-db.org/network/1835721.TRABTM_A_0191050S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 fa [...]
ibpA protein networkhttps://string-db.org/network/1835721.TRABTM_A_01920Small heat shock protein IbpA; Product derived from UniProtKB/Swiss-Prot:C6DGL0;Gene name derived from UniProtKB/Swiss-Prot:C6DGL0; Belongs to the small heat shock protein (HSP20) family.
ibpB protein networkhttps://string-db.org/network/1835721.TRABTM_A_01930Small heat shock protein IbpB; Product derived from UniProtKB/Swiss-Prot:Q6CYV3;Gene name derived from UniProtKB/Swiss-Prot:Q6CYV3; Belongs to the small heat shock protein (HSP20) family.
glyQ protein networkhttps://string-db.org/network/1835721.TRABTM_A_01940Glycine--tRNA ligase alpha subunit; Product derived from UniProtKB/Swiss-Prot:A6TFH5;Gene name derived from UniProtKB/Swiss-Prot:A6TFH5;EC number derived from UniProtKB/Swiss-Prot:A6TFH5.
glyS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01950Glycine--tRNA ligase beta subunit; Product derived from UniProtKB/Swiss-Prot:Q2NX38;Gene name derived from UniProtKB/Swiss-Prot:Q2NX38;EC number derived from UniProtKB/Swiss-Prot:Q2NX38.
mutS protein networkhttps://string-db.org/network/1835721.TRABTM_A_01960DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase act [...]
lon protein networkhttps://string-db.org/network/1835721.TRABTM_A_01970Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular home [...]
clpX protein networkhttps://string-db.org/network/1835721.TRABTM_A_01980ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in th [...]
clpP protein networkhttps://string-db.org/network/1835721.TRABTM_A_01990ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degrada [...]
dnaK protein networkhttps://string-db.org/network/1835721.TRABTM_A_02010Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
dnaJ protein networkhttps://string-db.org/network/1835721.TRABTM_A_02020Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an [...]
rpsT protein networkhttps://string-db.org/network/1835721.TRABTM_A_0203030S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
ileS protein networkhttps://string-db.org/network/1835721.TRABTM_A_02040Isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such err [...]
recA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02050Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of hom [...]
alaS protein networkhttps://string-db.org/network/1835721.TRABTM_A_02060Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA( [...]
csrA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02070Carbon storage regulator homolog; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from [...]
tyrS protein networkhttps://string-db.org/network/1835721.TRABTM_A_02090Tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tR [...]
rnt protein networkhttps://string-db.org/network/1835721.TRABTM_A_02110Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP [...]
yrbA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02120Uncharacterized protein YrbA; Product derived from UniProtKB/Swiss-Prot:P0A9W8;Gene name derived from UniProtKB/Swiss-Prot:P0A9W8; Belongs to the BolA/IbaG family.
ribE protein networkhttps://string-db.org/network/1835721.TRABTM_A_02130Riboflavin synthase; Product derived from UniProtKB/Swiss-Prot:P0AFU9;Gene name derived from UniProtKB/Swiss-Prot:P0AFU9;EC number derived from UniProtKB/Swiss-Prot:P0AFU9.
greA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02140Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trappi [...]
rlmE protein networkhttps://string-db.org/network/1835721.TRABTM_A_02150Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
ftsH protein networkhttps://string-db.org/network/1835721.TRABTM_A_02160ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral memb [...]
secG protein networkhttps://string-db.org/network/1835721.TRABTM_A_02170Protein-export membrane protein SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
nusA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02180Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.
infB protein networkhttps://string-db.org/network/1835721.TRABTM_A_02190Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to [...]
rbfA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02200Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but n [...]
truB protein networkhttps://string-db.org/network/1835721.TRABTM_A_02210tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
rpsO protein networkhttps://string-db.org/network/1835721.TRABTM_A_0222030S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
pnp protein networkhttps://string-db.org/network/1835721.TRABTM_A_02230Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
deaD protein networkhttps://string-db.org/network/1835721.TRABTM_A_02240ATP-dependent RNA helicase DeaD; Product derived from UniProtKB/Swiss-Prot:Q8XA87;Gene name derived from UniProtKB/Swiss-Prot:Q8XA87;EC number derived from UniProtKB/Swiss-Prot:Q8XA87; Belongs to [...]
mnmE protein networkhttps://string-db.org/network/1835721.TRABTM_A_02250tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain t [...]
yidC protein networkhttps://string-db.org/network/1835721.TRABTM_A_02260Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane pro [...]
rnpA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02270Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. [...]
rpmH protein networkhttps://string-db.org/network/1835721.TRABTM_A_0228050S ribosomal protein L34; Product derived from UniProtKB/Swiss-Prot:B2VCE4;Gene name derived from UniProtKB/Swiss-Prot:B2VCE4; Belongs to the bacterial ribosomal protein bL34 family.
dnaN protein networkhttps://string-db.org/network/1835721.TRABTM_A_02290DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loadin [...]
fmt protein networkhttps://string-db.org/network/1835721.TRABTM_A_02300Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethi [...]
def protein networkhttps://string-db.org/network/1835721.TRABTM_A_02310Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a [...]
efp protein networkhttps://string-db.org/network/1835721.TRABTM_A_02320Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by [...]
groL protein networkhttps://string-db.org/network/1835721.TRABTM_A_0234060 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
groS protein networkhttps://string-db.org/network/1835721.TRABTM_A_0235010 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
mutL protein networkhttps://string-db.org/network/1835721.TRABTM_A_02360DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchm [...]
miaA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02370tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(di [...]
rlmB protein networkhttps://string-db.org/network/1835721.TRABTM_A_0238023S rRNA (guanosine-2'-O-)-methyltransferase RlmB; Specifically methylates the ribose of guanosine 2251 in 23S rRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA me [...]
mnmA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02390tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln), leading to the formation of s(2)U34, the first step o [...]
ycfH protein networkhttps://string-db.org/network/1835721.TRABTM_A_02410Uncharacterized deoxyribonuclease YcfH; Product derived from UniProtKB/Swiss-Prot:P0AFQ7;Gene name derived from UniProtKB/Swiss-Prot:P0AFQ7;EC number derived from UniProtKB/Swiss-Prot:P0AFQ7.
holB protein networkhttps://string-db.org/network/1835721.TRABTM_A_02420DNA polymerase III subunit delta; Product derived from UniProtKB/Swiss-Prot:O69170;Gene name derived from UniProtKB/Swiss-Prot:O69170;EC number derived from UniProtKB/Swiss-Prot:O69170.
mnmG protein networkhttps://string-db.org/network/1835721.TRABTM_A_02430tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain t [...]
rluC protein networkhttps://string-db.org/network/1835721.TRABTM_A_02440Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
engB protein networkhttps://string-db.org/network/1835721.TRABTM_A_02470Probable GTP-binding protein EngB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. E [...]
typA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02480GTP-binding protein TypA/BipA; Product derived from UniProtKB/Swiss-Prot:P0A3B4;Gene name derived from UniProtKB/Swiss-Prot:P0A3B4.
rplQ protein networkhttps://string-db.org/network/1835721.TRABTM_A_0249050S ribosomal protein L17; Product derived from UniProtKB/Swiss-Prot:C6DFS2;Gene name derived from UniProtKB/Swiss-Prot:C6DFS2.
rpoA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02500DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
rpsD protein networkhttps://string-db.org/network/1835721.TRABTM_A_0251030S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
rpsK protein networkhttps://string-db.org/network/1835721.TRABTM_A_0252030S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belon [...]
rpsM protein networkhttps://string-db.org/network/1835721.TRABTM_A_0253030S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 [...]
rpmJ1 protein networkhttps://string-db.org/network/1835721.TRABTM_A_0253150S ribosomal protein L36 1; Product derived from UniProtKB/Swiss-Prot:Q8ZJ91;Gene name derived from UniProtKB/Swiss-Prot:Q8ZJ91; Belongs to the bacterial ribosomal protein bL36 family.
secY protein networkhttps://string-db.org/network/1835721.TRABTM_A_02540Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the [...]
rplO protein networkhttps://string-db.org/network/1835721.TRABTM_A_0255050S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
rpmD protein networkhttps://string-db.org/network/1835721.TRABTM_A_0256050S ribosomal protein L30; Product derived from UniProtKB/Swiss-Prot:Q7MYG9;Gene name derived from UniProtKB/Swiss-Prot:Q7MYG9.
rpsE protein networkhttps://string-db.org/network/1835721.TRABTM_A_0257030S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 fam [...]
rplR protein networkhttps://string-db.org/network/1835721.TRABTM_A_0258050S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protubera [...]
rplF protein networkhttps://string-db.org/network/1835721.TRABTM_A_0259050S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the t [...]
rpsH protein networkhttps://string-db.org/network/1835721.TRABTM_A_0260030S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to [...]
rpsN protein networkhttps://string-db.org/network/1835721.TRABTM_A_0261030S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the un [...]
rplE protein networkhttps://string-db.org/network/1835721.TRABTM_A_0262050S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance [...]
rplX protein networkhttps://string-db.org/network/1835721.TRABTM_A_0263050S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
rplN protein networkhttps://string-db.org/network/1835721.TRABTM_A_0264050S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
rpsQ protein networkhttps://string-db.org/network/1835721.TRABTM_A_0265030S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
rplP protein networkhttps://string-db.org/network/1835721.TRABTM_A_0266050S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
rpsC protein networkhttps://string-db.org/network/1835721.TRABTM_A_0267030S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
rplV protein networkhttps://string-db.org/network/1835721.TRABTM_A_0268050S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wal [...]
rpsS protein networkhttps://string-db.org/network/1835721.TRABTM_A_0269030S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
rplB protein networkhttps://string-db.org/network/1835721.TRABTM_A_0270050S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It [...]
rplD protein networkhttps://string-db.org/network/1835721.TRABTM_A_0272050S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
rplC protein networkhttps://string-db.org/network/1835721.TRABTM_A_0273050S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
rpsJ protein networkhttps://string-db.org/network/1835721.TRABTM_A_0274030S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
tuf2 protein networkhttps://string-db.org/network/1835721.TRABTM_A_02750Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
rpoC protein networkhttps://string-db.org/network/1835721.TRABTM_A_02760DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
rpoB protein networkhttps://string-db.org/network/1835721.TRABTM_A_02770DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
rplL protein networkhttps://string-db.org/network/1835721.TRABTM_A_0278050S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the ba [...]
rplJ protein networkhttps://string-db.org/network/1835721.TRABTM_A_0279050S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal prot [...]
rplA protein networkhttps://string-db.org/network/1835721.TRABTM_A_0280050S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
rplK protein networkhttps://string-db.org/network/1835721.TRABTM_A_0281050S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
nusG protein networkhttps://string-db.org/network/1835721.TRABTM_A_02820Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination. In the absence of Rho, increases the rate of transcription elong [...]
fusA protein networkhttps://string-db.org/network/1835721.TRABTM_A_02840Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- [...]
rpsG protein networkhttps://string-db.org/network/1835721.TRABTM_A_0285030S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit inte [...]
rpsL protein networkhttps://string-db.org/network/1835721.TRABTM_A_0286030S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S an [...]
tusB protein networkhttps://string-db.org/network/1835721.TRABTM_A_02870Protein TusB; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions.